STRINGSTRING
Psed_5544 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5544" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5544Hypothetical protein (185 aa)    
Predicted Functional Partners:
Psed_5545
Hypothetical protein (117 aa)
              0.859
Psed_5543
Hypothetical protein (118 aa)
              0.859
Psed_5491
Dual specificity protein phosphatase (154 aa)
   
          0.667
Psed_5542
Winged helix family transcriptional regulator (999 aa)
              0.633
Psed_4743
Hypothetical protein (71 aa)
   
          0.630
Psed_4811
N-6 DNA methylase (585 aa)
   
          0.596
Psed_5541
AraC family transcriptional regulator (275 aa)
              0.530
Psed_5994
Hypothetical protein (198 aa)
   
          0.513
Psed_1583
F420-dependent protein (130 aa)
   
          0.473
Psed_0495
TetR family transcriptional regulator (359 aa)
 
          0.460
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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