STRINGSTRING
htpX protein (Pseudonocardia dioxanivorans) - STRING interaction network
"htpX" - Protease htpX in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
htpXProtease htpX (282 aa)    
Predicted Functional Partners:
Psed_0425
Tjhreonine aldolase (387 aa)
       
      0.613
Psed_5547
Thioesterase (183 aa)
              0.607
Psed_5154
Signal transduction histidine kinase (499 aa)
   
          0.571
Psed_2369
Methylase (215 aa)
 
     
  0.569
Psed_0231
Peptidyl-dipeptidase Dcp (677 aa)
     
 
  0.561
Psed_5892
NADPH--hemoprotein reductase (1080 aa)
   
 
  0.555
Psed_5708
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (190 aa)
         
  0.491
Psed_3434
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (182 aa)
         
  0.491
Psed_3880
Response regulator receiver and ANTAR domain-containing protein (209 aa)
 
          0.480
Psed_5548
enoyl-CoA hydratase (255 aa)
              0.476
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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