STRINGSTRING
Psed_5578 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5578" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5578LuxR family transcriptional regulator (932 aa)    
Predicted Functional Partners:
Psed_2950
Hypothetical protein (389 aa)
   
          0.641
Psed_5531
DNA translocase FtsK (497 aa)
   
          0.619
Psed_2617
Hypothetical protein (71 aa)
   
          0.593
Psed_3967
GCN5-like N-acetyltransferase (365 aa)
   
          0.576
Psed_5579
MOSC domain-containing protein beta barrel domain-containing protein (282 aa)
              0.564
Psed_5329
ATPase AAA (710 aa)
   
          0.560
Psed_5245
TetR family transcriptional regulator (216 aa)
   
          0.559
Psed_6412
Histidine kinase (364 aa)
   
          0.530
Psed_6410
Peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin (219 aa)
 
          0.506
Psed_2051
Major facilitator superfamily protein (469 aa)
   
          0.504
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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