STRINGSTRING
Psed_5594 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5594" - ANTAR domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5594ANTAR domain-containing protein (221 aa)    
Predicted Functional Partners:
Psed_2376
ANTAR domain-containing protein (190 aa)
   
          0.758
Psed_0086
ANTAR domain-containing protein (251 aa)
   
          0.689
Psed_0912
ANTAR domain-containing protein (254 aa)
   
          0.688
Psed_2422
Hypothetical protein (177 aa)
   
          0.612
Psed_0651
ANTAR domain-containing protein (257 aa)
   
          0.600
Psed_2368
Iron sulfur domain-containing protein (74 aa)
   
          0.581
Psed_4213
Alpha/beta hydrolase (287 aa)
   
          0.579
Psed_3152
ATP-binding protein (179 aa)
   
          0.554
Psed_1652
Hypothetical protein (659 aa)
   
          0.513
Psed_6643
Hypothetical protein (207 aa)
   
          0.512
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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