STRINGSTRING
Psed_5596 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5596" - TetR family transcriptional regulator in Pseudonocardia dioxanivorans
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5596TetR family transcriptional regulator (169 aa)    
Predicted Functional Partners:
Psed_5595
GCN5-like N-acetyltransferase (174 aa)
 
          0.731
Psed_3957
Hypothetical protein (201 aa)
   
          0.630
Psed_5597
Naphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA) (302 aa)
              0.616
Psed_2351
Helix-turn-helix domain-containing protein (101 aa)
   
          0.585
Psed_3178
Type 11 methyltransferase (268 aa)
   
          0.570
Psed_5710
Hypothetical protein (231 aa)
   
          0.550
Psed_3344
G-D-S-L family lipolytic protein (305 aa)
   
          0.514
Psed_3437
Hypothetical protein (65 aa)
   
          0.472
Psed_0250
Xenobiotic-transporting ATPase (572 aa)
   
          0.426
Psed_1568
TetR family transcriptional regulator (262 aa)
   
          0.417
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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