STRINGSTRING
Psed_5599 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5599" - ATP-dependent helicase HrpB in Pseudonocardia dioxanivorans
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5599ATP-dependent helicase HrpB (810 aa)    
Predicted Functional Partners:
Psed_3872
RNA binding S1 domain-containing protein (487 aa)
   
  0.960
Psed_1260
DEAD/DEAH box helicase domain-containing protein (1170 aa)
   
  0.956
Psed_4690
DEAD/DEAH box helicase domain-containing protein (504 aa)
 
  0.947
Psed_2891
3’-5’ exonuclease (394 aa)
 
  0.941
Psed_3068
DEAD/DEAH box helicase domain-containing protein (659 aa)
   
  0.940
Psed_1069
DEAD/DEAH box helicase domain-containing protein (621 aa)
   
  0.940
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (699 aa)
     
  0.938
Psed_3602
Small GTP-binding protein (717 aa)
     
  0.938
Psed_3577
Cyclophilin type peptidyl-prolyl cis-trans isomerase (266 aa)
       
  0.905
Psed_0225
Cyclophilin type peptidyl-prolyl cis-trans isomerase (234 aa)
       
  0.905
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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