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Psed_5615 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5615" - RDD domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5615RDD domain-containing protein (273 aa)    
Predicted Functional Partners:
Psed_1869
Polysaccharide biosynthesis protein CelD (353 aa)
   
          0.670
Psed_5616
Porphobilinogen synthase (326 aa)
              0.653
Psed_4390
Hypothetical protein (371 aa)
   
          0.622
Psed_3558
PucR family transcriptional regulator (375 aa)
   
          0.585
Psed_5232
Hypothetical protein (506 aa)
   
          0.554
Psed_0369
GCN5-like N-acetyltransferase (356 aa)
   
          0.531
Psed_2823
Abortive infection protein (244 aa)
   
          0.518
Psed_5614
Hypothetical protein (169 aa)
              0.515
Psed_1999
Winged helix family transcriptional regulator (1107 aa)
   
          0.499
Psed_0711
Hypothetical protein (197 aa)
   
          0.491
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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