STRINGSTRING
Psed_5626 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5626" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5626Hypothetical protein (526 aa)    
Predicted Functional Partners:
Psed_0895
Hypothetical protein (145 aa)
   
          0.722
Psed_4461
Hypothetical protein (116 aa)
   
          0.683
Psed_6562
Hypothetical protein (1018 aa)
   
          0.672
Psed_5234
Integrase protein (408 aa)
   
          0.670
Psed_3056
Hypothetical protein (163 aa)
   
          0.658
Psed_5233
Excisionase (59 aa)
   
          0.635
Psed_1976
Lysyl oxidase-like protein (317 aa)
   
          0.621
Psed_0165
Hypothetical protein (294 aa)
   
          0.621
Psed_5625
ECF subfamily RNA polymerase sigma-24 subunit (202 aa)
 
          0.619
Psed_6582
Hypothetical protein (842 aa)
   
          0.604
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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