STRINGSTRING
Psed_5662 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5662" - Peptidase S58 DmpA in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5662Peptidase S58 DmpA (338 aa)    
Predicted Functional Partners:
Psed_5663
Hypothetical protein (250 aa)
              0.700
Psed_5664
Hypothetical protein (162 aa)
              0.588
Psed_1507
Hypothetical protein (185 aa)
 
          0.480
Psed_5665
Winged helix family two component transcriptional regulator (226 aa)
              0.451
Psed_5666
Histidine kinase (423 aa)
              0.448
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis (275 aa)
   
        0.429
Psed_1505
Nicotinate phosphoribosyltransferase; Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP (435 aa)
   
        0.428
clpS
ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (98 aa)
   
        0.427
Psed_2182
Nicotinamide phosphoribosyltransferase (486 aa)
   
        0.425
Psed_2158
Nicotinamide phosphoribosyltransferase (484 aa)
   
        0.425
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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