STRINGSTRING
Psed_5678 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5678" - Type I phosphodiesterase/nucleotide pyrophosphatase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5678Type I phosphodiesterase/nucleotide pyrophosphatase (381 aa)    
Predicted Functional Partners:
Psed_5677
Family 2 glycosyl transferase (504 aa)
   
 
  0.720
Psed_3981
GCN5-like N-acetyltransferase (951 aa)
 
      0.693
Psed_3055
Hypothetical protein (100 aa)
   
          0.614
Psed_5210
3-methyl-adenine DNA glycosylase (305 aa)
 
          0.548
Psed_5927
Aminoglycoside phosphotransferase (328 aa)
   
          0.543
Psed_5154
Signal transduction histidine kinase (499 aa)
   
          0.533
Psed_5633
Aromatic compounds degradation protein PaaI (284 aa)
   
          0.475
Psed_0164
Hypothetical protein (275 aa)
   
          0.453
Psed_5153
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA (83 aa)
   
          0.452
Psed_0898
Hypothetical protein (176 aa)
   
          0.445
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (11%) [HD]