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Psed_5685 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5685" - 3-hydroxyacyl-CoA dehydrogenase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_56853-hydroxyacyl-CoA dehydrogenase (326 aa)    
Predicted Functional Partners:
Psed_6149
enoyl-CoA hydratase (170 aa)
 
  0.969
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
  0.956
Psed_0627
Thiolase (392 aa)
 
 
  0.948
Psed_2494
Thiolase (375 aa)
 
 
  0.946
Psed_2234
Thiolase (380 aa)
 
 
  0.944
Psed_5169
enoyl-CoA hydratase (290 aa)
 
  0.942
Psed_6174
acetyl-CoA acetyltransferase (426 aa)
   
 
  0.928
Psed_6148
acetyl-CoA acetyltransferase (403 aa)
   
 
  0.928
Psed_5500
acetyl-CoA acetyltransferase (392 aa)
   
 
  0.928
Psed_4924
acetyl-CoA acetyltransferase (403 aa)
   
 
  0.928
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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