STRINGSTRING
Psed_5689 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5689" - Histidine kinase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5689Histidine kinase (407 aa)    
Predicted Functional Partners:
Psed_5690
LuxR family transcriptional regulator (215 aa)
 
 
  0.961
Psed_1559
LuxR family transcriptional regulator (219 aa)
 
 
  0.815
Psed_1635
LuxR family transcriptional regulator (244 aa)
 
 
  0.810
Psed_3007
LuxR family transcriptional regulator (221 aa)
 
 
  0.805
Psed_4616
Histidine kinase (427 aa)
 
   
  0.793
Psed_4615
LuxR family transcriptional regulator (212 aa)
 
 
  0.783
Psed_4535
LuxR family transcriptional regulator (218 aa)
 
 
  0.780
Psed_6350
Histidine kinase (294 aa)
   
          0.772
Psed_6639
LuxR family transcriptional regulator (221 aa)
 
 
  0.763
Psed_1738
LuxR family transcriptional regulator (219 aa)
 
 
  0.756
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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