STRINGSTRING
Psed_5715 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5715" - Cold-shock DNA-binding domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5715Cold-shock DNA-binding domain-containing protein (67 aa)    
Predicted Functional Partners:
Psed_4690
DEAD/DEAH box helicase domain-containing protein (504 aa)
 
  0.918
Psed_3068
DEAD/DEAH box helicase domain-containing protein (659 aa)
   
  0.907
Psed_1069
DEAD/DEAH box helicase domain-containing protein (621 aa)
   
  0.907
Psed_6555
Molecular chaperone DnaK; Acts as a chaperone (618 aa)
   
  0.883
Psed_3485
Molecular chaperone DnaK; Acts as a chaperone (628 aa)
   
  0.883
Psed_2209
Molecular chaperone DnaK; Acts as a chaperone (627 aa)
   
  0.883
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (347 aa)
   
  0.860
Psed_6591
Molecular chaperone DnaK (655 aa)
   
  0.851
Psed_3005
Hypothetical protein (872 aa)
   
  0.851
Psed_1830
Molecular chaperone DnaK (585 aa)
   
  0.851
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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