STRINGSTRING
Psed_5739 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5739" - XshC-Cox1-family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5739XshC-Cox1-family protein (375 aa)    
Predicted Functional Partners:
Psed_5738
Von Willebrand factor A (382 aa)
 
   
  0.933
Psed_5737
ATPase (300 aa)
 
     
  0.905
Psed_6596
Isoquinoline 1-oxidoreductase (152 aa)
 
   
  0.792
Psed_0269
Isoquinoline 1-oxidoreductase (156 aa)
 
   
  0.788
Psed_2657
Carbon-monoxide dehydrogenase (155 aa)
 
   
  0.763
Psed_5731
Hypothetical protein (198 aa)
 
          0.758
Psed_2952
Carbon monoxide dehydrogenase subunit G (227 aa)
 
        0.749
Psed_6597
Isoquinoline 1-oxidoreductase (753 aa)
 
   
  0.734
Psed_5673
Carbon monoxide dehydrogenase subunit G (248 aa)
 
        0.732
Psed_2960
Carbon-monoxide dehydrogenase (184 aa)
 
   
  0.712
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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