STRINGSTRING
Psed_5820 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5820" - Integrase protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5820Integrase protein (261 aa)    
Predicted Functional Partners:
hisS
histidyl-tRNA synthetase (438 aa)
     
 
  0.519
dnaA
Chromosome replication initiator DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box)- 5’-TTATC[CA]A[CA]A-3’. DnaA binds to ATP and to acidic phospholipids (555 aa)
   
   
  0.504
xerD
Tyrosine recombinase xerC (307 aa)
 
 
 
  0.451
truB
tRNA pseudouridine synthase B; Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs (298 aa)
   
        0.440
Psed_5821
Hypothetical protein (231 aa)
              0.429
Psed_3467
Integrase protein (331 aa)
 
 
 
  0.426
rnhB
Ribonuclease H; Endonuclease that specifically degrades the RNA of RNA- DNA hybrids (265 aa)
         
  0.420
Psed_4733
DNA protecting protein DprA (396 aa)
         
  0.420
Psed_1225
DNA protecting protein DprA (292 aa)
         
  0.420
Psed_4735
Hypothetical protein (118 aa)
              0.412
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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