STRINGSTRING
Psed_5832 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5832" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5832Hypothetical protein (69 aa)    
Predicted Functional Partners:
Psed_5833
Hypothetical protein (135 aa)
 
          0.714
Psed_3750
Hypothetical protein (169 aa)
   
          0.681
Psed_5232
Hypothetical protein (506 aa)
   
          0.588
Psed_6029
Short-chain dehydrogenase/reductase SDR (331 aa)
   
          0.434
Psed_4210
Major facilitator superfamily protein (367 aa)
   
          0.428
Psed_2397
acyl-CoA dehydrogenase-like protein (340 aa)
   
          0.426
Psed_5834
Phosphate transporter (384 aa)
              0.411
Psed_5835
Hypothetical protein (80 aa)
              0.401
Psed_3269
Hypothetical protein (84 aa)
   
          0.400
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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