STRINGSTRING
Psed_5836 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5836" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5836Hypothetical protein (98 aa)    
Predicted Functional Partners:
Psed_5834
Phosphate transporter (384 aa)
 
        0.887
Psed_5835
Hypothetical protein (80 aa)
              0.721
Psed_4706
Transmembrane protein (133 aa)
   
          0.648
Psed_0549
Cysteine dioxygenase type I (175 aa)
   
          0.633
Psed_0092
Hypothetical protein (322 aa)
   
        0.584
Psed_0961
Hypothetical protein (252 aa)
   
          0.565
Psed_1281
Phosphate transporter (336 aa)
 
        0.520
Psed_3059
Hypothetical protein (250 aa)
   
          0.492
Psed_0547
Acetoacetate decarboxylase (229 aa)
   
          0.491
Psed_6323
Hypothetical protein (363 aa)
   
          0.462
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]