STRINGSTRING
Psed_5843 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5843" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5843Hypothetical protein (245 aa)    
Predicted Functional Partners:
Psed_5844
Hypothetical protein (68 aa)
              0.834
Psed_0394
Hypothetical protein (211 aa)
   
          0.760
Psed_5118
DNA translocase FtsK (958 aa)
   
          0.755
Psed_5845
ECF subfamily RNA polymerase sigma-24 subunit (184 aa)
 
          0.737
Psed_6582
Hypothetical protein (842 aa)
   
          0.737
Psed_0447
Hypothetical protein (276 aa)
   
          0.731
Psed_6562
Hypothetical protein (1018 aa)
   
          0.714
Psed_5352
Hypothetical protein (126 aa)
   
          0.691
Psed_5093
Hypothetical protein (79 aa)
   
          0.685
Psed_1300
Cytochrome c biogenesis protein transmembrane region (288 aa)
   
          0.654
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (8%) [HD]