STRINGSTRING
Psed_5872 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5872" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5872Hypothetical protein (162 aa)    
Predicted Functional Partners:
Psed_5871
Hypothetical protein (117 aa)
              0.815
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1300 aa)
   
 
 
  0.798
Psed_1852
Lipoprotein (518 aa)
   
          0.685
Psed_1851
Heparinase II/III family protein (662 aa)
   
          0.640
Psed_1858
Polysaccharide biosynthesis protein (528 aa)
   
          0.563
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
 
          0.555
Psed_3178
Type 11 methyltransferase (268 aa)
   
          0.513
Psed_2963
acetyl-CoA carboxylase (494 aa)
         
  0.501
Psed_0711
Hypothetical protein (197 aa)
   
          0.479
Psed_1859
Phosphoesterase PA-phosphatase-like protein (256 aa)
   
          0.477
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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