STRINGSTRING
Psed_5873 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5873" - Transcriptional regulator CdaR in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5873Transcriptional regulator CdaR (409 aa)    
Predicted Functional Partners:
Psed_5874
ErfK/YbiS/YcfS/YnhG family protein (407 aa)
              0.550
Psed_3885
Hypothetical protein (820 aa)
   
          0.523
Psed_1260
DEAD/DEAH box helicase domain-containing protein (1170 aa)
   
          0.516
Psed_0204
Hypothetical protein (239 aa)
   
          0.511
Psed_0257
Hypothetical protein (372 aa)
   
          0.509
Psed_1531
Anti-anti-sigma factor (150 aa)
   
          0.459
Psed_3932
Beta-lactamase (438 aa)
   
          0.444
Psed_5143
Peptidase S24/S26A/S26B, conserved region (109 aa)
   
          0.433
Psed_1568
TetR family transcriptional regulator (262 aa)
   
          0.433
Psed_0374
Cupin (162 aa)
   
          0.405
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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