STRINGSTRING
Psed_5874 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5874" - ErfK/YbiS/YcfS/YnhG family protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5874ErfK/YbiS/YcfS/YnhG family protein (407 aa)    
Predicted Functional Partners:
Psed_1783
vitamin-B12 independent methionine synthase (421 aa)
   
          0.754
Psed_1687
Hypothetical protein (145 aa)
   
          0.730
Psed_4572
Hypothetical protein (244 aa)
   
          0.723
Psed_2142
Hypothetical protein (144 aa)
   
          0.710
Psed_6660
Hypothetical protein (533 aa)
   
          0.697
Psed_1793
Amino acid-binding ACT domain-containing protein (219 aa)
   
        0.695
Psed_4653
Hypothetical protein (208 aa)
   
          0.680
Psed_4545
Cytochrome-c oxidase; Part of cytochrome c oxidase, its function is unknown (132 aa)
 
          0.645
Psed_0428
Adenylosuccinate lyase (472 aa)
 
          0.620
Psed_6681
Hypothetical protein (214 aa)
   
          0.616
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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