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Psed_5889 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5889" - LuxR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5889LuxR family transcriptional regulator (899 aa)    
Predicted Functional Partners:
Psed_5888
Amidohydrolase (410 aa)
   
        0.636
Psed_5542
Winged helix family transcriptional regulator (999 aa)
   
          0.611
Psed_5892
NADPH--hemoprotein reductase (1080 aa)
              0.569
Psed_5891
Hypothetical protein (239 aa)
              0.565
Psed_5890
Hypothetical protein (63 aa)
              0.565
Psed_6438
Hemerythrin HHE cation binding domain-containing protein (279 aa)
   
          0.555
Psed_1706
LuxR family transcriptional regulator (940 aa)
 
          0.523
Psed_5862
Hypothetical protein (246 aa)
   
          0.476
Psed_1981
Cupin (116 aa)
   
        0.462
Psed_4633
Cupin (132 aa)
   
        0.457
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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