STRINGSTRING
Psed_5903 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5903" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5903Hypothetical protein (241 aa)    
Predicted Functional Partners:
Psed_5904
Cytochrome P450 (405 aa)
              0.859
Psed_2736
Hypothetical protein (226 aa)
   
          0.778
Psed_4307
Phosphoesterase (613 aa)
   
          0.715
Psed_5271
Hypothetical protein (158 aa)
   
          0.637
Psed_5905
Acetylornithine transaminase (424 aa)
              0.574
Psed_0714
Nitroreductase (332 aa)
   
          0.557
Psed_5902
Sodium/hydrogen exchanger (421 aa)
              0.542
Psed_3170
Regulatory protein MarR (163 aa)
   
          0.491
Psed_5906
Hypothetical protein (85 aa)
              0.483
Psed_6351
Transposase IS4 family protein (269 aa)
   
          0.478
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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