STRINGSTRING
Psed_5909 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5909" - GntR family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5909GntR family transcriptional regulator (239 aa)    
Predicted Functional Partners:
Psed_5910
phenylacetate--CoA ligase (461 aa)
              0.860
Psed_3029
GntR family transcriptional regulator (249 aa)
   
          0.778
Psed_4952
D-lactate dehydrogenase (929 aa)
 
   
  0.697
Psed_6028
D-lactate dehydrogenase (1050 aa)
   
   
  0.655
Psed_5593
D-lactate dehydrogenase (982 aa)
   
   
  0.655
Psed_5912
Acetone carboxylase subunit gamma (125 aa)
 
          0.642
Psed_5914
Hydantoinase B/oxoprolinase (684 aa)
 
          0.623
Psed_4636
GntR family transcriptional regulator (233 aa)
   
   
  0.592
Psed_2963
acetyl-CoA carboxylase (494 aa)
         
  0.591
Psed_5322
(S)-2-hydroxy-acid oxidase (415 aa)
   
   
  0.567
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (10%) [HD]