STRINGSTRING
Psed_5915 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5915" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5915Hypothetical protein (203 aa)    
Predicted Functional Partners:
Psed_5914
Hydantoinase B/oxoprolinase (684 aa)
              0.824
Psed_5913
5-oxoprolinase (739 aa)
              0.824
Psed_5912
Acetone carboxylase subunit gamma (125 aa)
              0.824
Psed_5911
Hydantoinase/oxoprolinase (627 aa)
              0.824
Psed_5917
long-chain-fatty-acid--CoA ligase (633 aa)
              0.599
Psed_5916
acetyl-CoA C-acetyltransferase (395 aa)
              0.599
Psed_5910
phenylacetate--CoA ligase (461 aa)
              0.522
Psed_5909
GntR family transcriptional regulator (239 aa)
              0.522
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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