STRINGSTRING
Psed_5928 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5928" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5928Hypothetical protein (164 aa)    
Predicted Functional Partners:
Psed_3957
Hypothetical protein (201 aa)
   
          0.656
Psed_5822
G-D-S-L family lipolytic protein (266 aa)
   
          0.635
Psed_5927
Aminoglycoside phosphotransferase (328 aa)
              0.611
Psed_6409
Hypothetical protein (316 aa)
   
          0.572
Psed_5926
AMP-dependent synthetase/ligase (458 aa)
              0.572
Psed_5626
Hypothetical protein (526 aa)
   
          0.529
Psed_2021
DoxX family protein (272 aa)
   
          0.499
Psed_0314
Hypothetical protein (239 aa)
   
          0.494
Psed_5035
TetR family transcriptional regulator (192 aa)
   
          0.491
Psed_2884
Major facilitator superfamily protein (435 aa)
   
          0.490
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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