STRINGSTRING
Psed_5938 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5938" - Glycoside hydrolase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5938Glycoside hydrolase protein (95 aa)    
Predicted Functional Partners:
Psed_0668
Hypothetical protein (94 aa)
   
          0.640
Psed_0921
Hypothetical protein (116 aa)
   
          0.634
Psed_2877
Hypothetical protein (186 aa)
   
          0.576
Psed_5937
TetR family transcriptional regulator (206 aa)
              0.575
Psed_2314
ATP-binding protein (241 aa)
   
          0.556
Psed_1934
Hypothetical protein (375 aa)
   
          0.552
Psed_1960
CsbD family protein (57 aa)
   
          0.547
Psed_6599
N-acetylmuramoyl-L-alanine amidase (354 aa)
   
          0.527
Psed_4065
Peptidase M28 (748 aa)
   
          0.523
Psed_3811
Hypothetical protein (255 aa)
   
          0.509
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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