STRINGSTRING
Psed_5943 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5943" - Type 12 methyltransferase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5943Type 12 methyltransferase (203 aa)    
Predicted Functional Partners:
Psed_5942
Hypothetical protein (223 aa)
          0.989
Psed_5941
Family 2 glycosyl transferase (215 aa)
 
          0.970
Psed_5940
UDP-glucose 4-epimerase (351 aa)
 
          0.930
Psed_5949
Hypothetical protein (429 aa)
 
          0.791
Psed_5947
Oxidoreductase molybdopterin binding protein (396 aa)
 
          0.786
Psed_2198
Hypothetical protein (254 aa)
   
          0.629
Psed_5946
Winged helix family two component transcriptional regulator (260 aa)
 
          0.580
Psed_1750
Hypothetical protein (259 aa)
   
          0.552
Psed_4435
Hypothetical protein (161 aa)
   
          0.549
Psed_2419
Flavodoxin-like protein (192 aa)
   
          0.508
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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