STRINGSTRING
Psed_5958 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5958" - Agarase in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5958Agarase (371 aa)    
Predicted Functional Partners:
Psed_5957
Hypothetical protein (290 aa)
              0.859
Psed_0732
LytTr DNA-binding protein (463 aa)
   
          0.663
Psed_5956
ArsR family transcriptional regulator (129 aa)
              0.662
Psed_2330
Hypothetical protein (295 aa)
   
          0.648
Psed_0987
Hypothetical protein (203 aa)
   
          0.584
Psed_5959
Hypothetical protein (386 aa)
              0.578
Psed_5955
ABC transporter substrate-binding protein (478 aa)
              0.557
Psed_4998
Hypothetical protein (147 aa)
   
          0.554
Psed_6365
Hypothetical protein (419 aa)
   
          0.548
Psed_1340
TetR family transcriptional regulator (190 aa)
   
          0.542
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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