STRINGSTRING
Psed_5985 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5985" - Peptidase M48 Ste24p in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5985Peptidase M48 Ste24p (298 aa)    
Predicted Functional Partners:
Psed_5984
Major facilitator superfamily protein (531 aa)
 
          0.879
Psed_5986
Hypothetical protein (144 aa)
 
          0.806
Psed_0092
Hypothetical protein (322 aa)
   
          0.724
Psed_3448
Hypothetical protein (330 aa)
   
          0.703
Psed_5987
Hypothetical protein (157 aa)
 
          0.668
Psed_2868
Hypothetical protein (212 aa)
   
          0.558
Psed_1077
Hypothetical protein (299 aa)
   
          0.510
Psed_0172
Hypothetical protein (150 aa)
   
          0.492
Psed_1093
Cobalamin (vitamin B12) biosynthesis CbiX protein (223 aa)
   
          0.483
Psed_6323
Hypothetical protein (363 aa)
   
          0.469
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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