STRINGSTRING
Psed_5999 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_5999" - Short-chain dehydrogenase/reductase SDR in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_5999Short-chain dehydrogenase/reductase SDR (321 aa)    
Predicted Functional Partners:
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
 
 
  0.854
Psed_6000
Helix-turn-helix domain-containing protein (290 aa)
 
          0.759
Psed_1569
Short-chain dehydrogenase/reductase SDR (308 aa)
 
          0.679
Psed_6532
Citrate synthase (271 aa)
 
   
  0.609
Psed_1852
Lipoprotein (518 aa)
   
          0.604
Psed_0649
3-hydroxybutyryl-CoA epimerase (720 aa)
   
 
  0.584
Psed_0286
NAD-dependent epimerase/dehydratase (332 aa)
 
 
  0.569
Psed_6529
S-adenosylhomocysteine deaminase (483 aa)
 
        0.551
Psed_5251
Hypothetical protein (217 aa)
   
          0.540
Psed_1851
Heparinase II/III family protein (662 aa)
   
          0.539
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
Server load: low (7%) [HD]