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Psed_6000 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6000" - Helix-turn-helix domain-containing protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6000Helix-turn-helix domain-containing protein (290 aa)    
Predicted Functional Partners:
Psed_5999
Short-chain dehydrogenase/reductase SDR (321 aa)
 
          0.759
Psed_1162
Short-chain dehydrogenase/reductase SDR (240 aa)
 
          0.660
Psed_3345
S-adenosylmethionine decarboxylase; Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine (399 aa)
         
  0.640
Psed_5245
TetR family transcriptional regulator (216 aa)
   
          0.638
Psed_1339
NAD-dependent epimerase/dehydratase (311 aa)
 
        0.575
Psed_4135
TetR family transcriptional regulator (196 aa)
   
          0.558
Psed_0223
NAD-dependent epimerase/dehydratase (298 aa)
 
        0.557
atpH
ATP synthase subunit delta; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation (280 aa)
       
      0.554
Psed_6001
Hypothetical protein (169 aa)
              0.540
Psed_6429
TetR family transcriptional regulator (184 aa)
   
          0.516
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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