STRINGSTRING
Psed_6010 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6010" - AsnC family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6010AsnC family transcriptional regulator (186 aa)    
Predicted Functional Partners:
Psed_5617
uroporphyrinogen-III C-methyltransferase (513 aa)
   
   
  0.652
Psed_2727
uroporphyrin-III C-methyltransferase (403 aa)
   
   
  0.650
Psed_1955
Glutamate synthase (1522 aa)
   
   
  0.632
Psed_5681
Radical SAM domain-containing protein (410 aa)
   
 
  0.613
Psed_3682
Hopanoid biosynthesis associated radical SAM protein HpnH (334 aa)
   
 
  0.613
pqqE
Coenzyme PQQ biosynthesis protein E (361 aa)
   
 
  0.613
Psed_2761
DNA polymerase III subunit epsilon (586 aa)
   
        0.539
Psed_6182
Kynurenine--oxoglutarate transaminase (387 aa)
         
  0.443
Psed_6012
Aspartate transaminase (391 aa)
         
  0.443
Psed_5465
Aspartate transaminase (407 aa)
         
  0.443
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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