STRINGSTRING
Psed_6023 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6023" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6023Hypothetical protein (314 aa)    
Predicted Functional Partners:
Psed_4863
Hypothetical protein (284 aa)
   
          0.773
Psed_0705
UspA domain-containing protein (294 aa)
   
          0.591
Psed_0897
Septum formation initiator (171 aa)
   
          0.569
Psed_3678
Squalene-associated FAD-dependent desaturase (477 aa)
   
          0.567
Psed_3687
Short-chain dehydrogenase/reductase SDR (247 aa)
 
          0.565
Psed_4038
Hypothetical protein (521 aa)
   
          0.537
Psed_0205
GtrA family protein (146 aa)
   
          0.522
Psed_1815
DoxX family protein (198 aa)
   
          0.507
Psed_6025
Hypothetical protein (70 aa)
              0.506
Psed_6024
Hypothetical protein (264 aa)
              0.506
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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