STRINGSTRING
Psed_6026 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6026" - Mandelate racemase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6026Mandelate racemase (372 aa)    
Predicted Functional Partners:
Psed_6029
Short-chain dehydrogenase/reductase SDR (331 aa)
 
          0.921
Psed_6027
Pyruvate dehydrogenase (604 aa)
 
          0.914
Psed_6028
D-lactate dehydrogenase (1050 aa)
 
   
  0.903
Psed_2427
Acetolactate synthase (601 aa)
 
          0.768
Psed_0666
Galactonate dehydratase (398 aa)
 
 
 
0.742
Psed_1850
Oxidoreductase domain-containing protein (735 aa)
 
   
  0.738
Psed_5593
D-lactate dehydrogenase (982 aa)
 
   
  0.706
Psed_6064
Muconate and chloromuconate cycloisomerase (373 aa)
 
          0.652
Psed_3094
Muconate and chloromuconate cycloisomerase (373 aa)
 
          0.646
Psed_6024
Hypothetical protein (264 aa)
              0.589
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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