STRINGSTRING
Psed_6033 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6033" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6033Hypothetical protein (129 aa)    
Predicted Functional Partners:
Psed_5545
Hypothetical protein (117 aa)
   
          0.777
Psed_6032
Pyridoxamine 5’-phosphate oxidase-related FMN-binding protein (162 aa)
              0.565
Psed_6037
Luciferase-like protein (361 aa)
              0.495
Psed_3066
Hypothetical protein (302 aa)
   
          0.494
Psed_6036
3-carboxyethylcatechol 2,3-dioxygenase (317 aa)
              0.490
Psed_6035
Dienelactone hydrolase (247 aa)
              0.490
Psed_6034
Alpha/beta hydrolase (260 aa)
              0.490
Psed_4005
Carbamoyl-phosphate synthase L chain ATP-binding protein (1086 aa)
   
          0.490
Psed_1420
Hypothetical protein (215 aa)
   
          0.484
Psed_0245
Hypothetical protein (164 aa)
   
          0.418
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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