STRINGSTRING
Psed_3948 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_3948" - Integrase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_3948Integrase protein (362 aa)    
Predicted Functional Partners:
Psed_3947
Transcriptional regulator (105 aa)
 
          0.967
Psed_4856
Transcriptional regulator (105 aa)
   
          0.778
Psed_3947
Transcriptional regulator (105 aa)
   
          0.778
xerC
Tyrosine recombinase xerC (310 aa)
   
          0.742
Psed_3467
Integrase protein (331 aa)
 
 
 
  0.711
Psed_3368
Integrase protein (425 aa)
   
          0.646
Psed_3468
Integrase protein (573 aa)
   
          0.615
Psed_1876
O-antigen polymerase (674 aa)
   
          0.610
Psed_1907
Hypothetical protein (573 aa)
   
          0.579
Psed_0342
Hypothetical protein (119 aa)
   
          0.562
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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