STRINGSTRING
Psed_6074 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6074" - Glycoside hydrolase protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6074Glycoside hydrolase protein (417 aa)    
Predicted Functional Partners:
Psed_6072
Chromosome partitioning ATPase (429 aa)
 
          0.883
Psed_6073
Hypothetical protein (374 aa)
              0.859
Psed_6071
Hypothetical protein (346 aa)
              0.859
Psed_6075
Hypothetical protein (627 aa)
              0.734
Psed_2617
Hypothetical protein (71 aa)
   
          0.624
Psed_4078
Hypothetical protein (243 aa)
   
          0.510
Psed_5588
2,2-dialkylglycine decarboxylase (428 aa)
   
          0.502
Psed_4427
TetR family transcriptional regulator (227 aa)
   
          0.485
Psed_5534
Integrase protein (461 aa)
   
          0.480
Psed_5859
Group 1 glycosyl transferase (388 aa)
   
          0.434
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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