STRINGSTRING
Psed_6093 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6093" - LacI family transcriptional regulator in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6093LacI family transcriptional regulator (365 aa)    
Predicted Functional Partners:
Psed_2059
LacI family transcriptional regulator (358 aa)
   
          0.776
Psed_1370
LacI family transcriptional regulator (343 aa)
   
          0.776
Psed_1802
LacI family transcriptional regulator (333 aa)
 
          0.768
Psed_5017
Fructokinase (320 aa)
 
   
  0.728
Psed_5168
Hypothetical protein (197 aa)
   
          0.693
Psed_5576
Hypothetical protein (170 aa)
   
          0.692
Psed_2996
Monosaccharide-transporting ATPase (259 aa)
 
   
  0.676
Psed_6095
Fe(3+)-transporting ATPase (282 aa)
              0.669
Psed_6094
Metal ion ABC transporter periplasmic subunit (308 aa)
              0.665
Psed_3190
ABC transporter permease (366 aa)
 
   
  0.657
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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