STRINGSTRING
Psed_6103 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6103" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6103Hypothetical protein (200 aa)    
Predicted Functional Partners:
Psed_5682
Hypothetical protein (102 aa)
   
          0.752
Psed_0141
Hypothetical protein (235 aa)
   
          0.734
Psed_4793
Hypothetical protein (191 aa)
   
          0.727
Psed_1577
Glyoxalase/bleomycin resistance protein/dioxygenase (133 aa)
   
          0.721
Psed_5681
Radical SAM domain-containing protein (410 aa)
   
          0.710
Psed_0964
Hypothetical protein (216 aa)
   
          0.685
Psed_5677
Family 2 glycosyl transferase (504 aa)
   
          0.672
Psed_6104
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (434 aa)
              0.660
Psed_0334
Hypothetical protein (170 aa)
   
          0.630
Psed_0947
Hypothetical protein (203 aa)
   
          0.612
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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