STRINGSTRING
Psed_6112 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6112" - Phytochrome sensor protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6112Phytochrome sensor protein (224 aa)    
Predicted Functional Partners:
Psed_5127
Fis family transcriptional regulator (356 aa)
   
          0.727
Psed_5256
LytTr DNA-binding protein (468 aa)
   
          0.711
Psed_6111
Silent information regulator protein Sir2 (258 aa)
              0.563
Psed_0035
TrwC relaxase (1465 aa)
   
          0.554
Psed_4380
TrwC relaxase (1457 aa)
   
          0.544
Psed_0732
LytTr DNA-binding protein (463 aa)
   
          0.543
Psed_2442
Fis family transcriptional regulator (587 aa)
   
          0.494
Psed_4210
Major facilitator superfamily protein (367 aa)
   
          0.491
Psed_0992
Hypothetical protein (346 aa)
   
          0.489
Psed_6110
Antibiotic biosynthesis monooxygenase (106 aa)
              0.458
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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