STRINGSTRING
Psed_6115 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6115" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6115Hypothetical protein (113 aa)    
Predicted Functional Partners:
Psed_6120
Oxidoreductase/dehydrogenase, Rossmann-like domain-containing protein (297 aa)
 
          0.775
clpS
ATP-dependent Clp protease adapter protein clpS; Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation (98 aa)
   
          0.733
Psed_6499
Hypothetical protein (59 aa)
   
          0.722
lysS
lysyl-tRNA synthetase (500 aa)
              0.711
Psed_2132
Hypothetical protein (162 aa)
   
          0.706
Psed_3055
Hypothetical protein (100 aa)
   
          0.694
Psed_5635
Xylose isomerase domain-containing protein (280 aa)
   
          0.686
Psed_5240
GtrA family protein (171 aa)
   
        0.643
Psed_1897
DsbA oxidoreductase (208 aa)
   
          0.626
Psed_2813
Hypothetical protein (95 aa)
 
          0.595
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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