STRINGSTRING
Psed_6143 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6143" - Amino acid permease in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6143Amino acid permease (472 aa)    
Predicted Functional Partners:
Psed_6140
Carbon-monoxide dehydrogenase (830 aa)
 
          0.883
Psed_6142
FAD dependent oxidoreductase (376 aa)
 
          0.873
Psed_6136
Von Willebrand factor A (405 aa)
 
          0.727
Psed_6139
Molybdopterin dehydrogenase FAD-binding protein (278 aa)
 
          0.721
Psed_6138
Carbon-monoxide dehydrogenase (200 aa)
 
          0.710
Psed_6141
Hypothetical protein (134 aa)
              0.687
Psed_6137
ATPase (306 aa)
              0.666
Psed_6135
Endoribonuclease L-PSP (130 aa)
              0.663
Psed_6134
Ureidoglycolate lyase (280 aa)
              0.663
Psed_6144
Amidohydrolase (479 aa)
              0.634
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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