STRINGSTRING
Psed_6150 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6150" - ATP-binding protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6150ATP-binding protein (309 aa)    
Predicted Functional Partners:
Psed_6151
Hypothetical protein (269 aa)
              0.728
Psed_0357
Helix-turn-helix domain-containing protein (298 aa)
   
          0.644
Psed_4080
Hypothetical protein (268 aa)
   
          0.642
Psed_3453
Hypothetical protein (111 aa)
   
          0.582
Psed_3659
Hypothetical protein (275 aa)
   
          0.581
Psed_3482
Hypothetical protein (127 aa)
   
          0.576
Psed_3661
Hypothetical protein (104 aa)
   
          0.575
Psed_3660
Helix-turn-helix domain-containing protein (296 aa)
   
          0.564
Psed_2212
Hypothetical protein (130 aa)
   
          0.555
Psed_6152
Survival protein SurE (269 aa)
              0.547
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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