STRINGSTRING
Psed_6199 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6199" - Molecular chaperone DnaJ in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6199Molecular chaperone DnaJ (405 aa)    
Predicted Functional Partners:
Psed_6198
Hypothetical protein (155 aa)
 
          0.877
Psed_3593
Hypothetical protein (284 aa)
 
          0.773
Psed_4261
Hypothetical protein (139 aa)
   
          0.753
Psed_5987
Hypothetical protein (157 aa)
   
          0.710
Psed_3591
Hypothetical protein (392 aa)
 
          0.706
Psed_5016
Polyketide cyclase/dehydrase (188 aa)
   
          0.661
Psed_6197
Major facilitator superfamily protein (437 aa)
              0.619
Psed_3590
Tellurium resistance (233 aa)
   
          0.593
Psed_6588
Chromosome partitioning ATPase (554 aa)
   
          0.534
Psed_0645
Cupin (107 aa)
   
          0.533
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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