STRINGSTRING
Psed_6201 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6201" - Amino acid/peptide transporter in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6201Amino acid/peptide transporter (496 aa)    
Predicted Functional Partners:
Psed_6200
PspA/IM30 family protein (212 aa)
              0.815
Psed_6205
Amidase (474 aa)
     
      0.543
Psed_6204
MmgE/PrpD family protein (464 aa)
   
        0.533
Psed_6203
Luciferase-like protein (349 aa)
              0.518
rutA
Pyrimidine utilization protein A; Catalyzes the pyrimidine ring opening between N-3 and C- 4 by an unusual flavin hydroperoxide-catalyzed mechanism to yield ureidoacrylate peracid. It cleaves pyrmidine rings directly by adding oxygen atoms, making a toxic ureidoacrylate peracid product which can be spontaneously reduced to ureidoacrylate (350 aa)
              0.516
Psed_6207
butyryl-CoA dehydrogenase (387 aa)
   
        0.506
Psed_6208
formyl-CoA transferase (406 aa)
              0.493
Psed_6206
Hypothetical protein (72 aa)
              0.493
Psed_3850
Peptidase S9B dipeptidylpeptidase IV domain-containing protein (701 aa)
   
        0.422
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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