STRINGSTRING
Psed_6226 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6226" - Hypothetical protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6226Hypothetical protein (303 aa)    
Predicted Functional Partners:
Psed_6225
Hypothetical protein (375 aa)
              0.859
Psed_4461
Hypothetical protein (116 aa)
   
          0.640
Psed_4427
TetR family transcriptional regulator (227 aa)
   
          0.633
Psed_6228
Histidine kinase (426 aa)
              0.625
Psed_2617
Hypothetical protein (71 aa)
   
          0.624
Psed_6227
LuxR family transcriptional regulator (221 aa)
              0.619
Psed_3540
Hypothetical protein (278 aa)
   
          0.608
Psed_1998
Hypothetical protein (117 aa)
   
          0.579
Psed_3416
Preprotein translocase subunit SecG (77 aa)
   
          0.575
Psed_5726
Hypothetical protein (306 aa)
   
          0.559
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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