STRINGSTRING
Psed_6234 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6234" - Luciferase-like protein in Pseudonocardia dioxanivorans
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6234Luciferase-like protein (356 aa)    
Predicted Functional Partners:
Psed_6235
Polyketide cyclase/dehydrase (180 aa)
 
          0.961
Psed_1331
LPPG-FO 2-phospho-L-lactate transferase (323 aa)
 
          0.781
Psed_5208
LPPG-FO 2-phospho-L-lactate transferase (335 aa)
 
          0.777
Psed_1473
F420-dependent oxidoreductase (309 aa)
   
          0.759
Psed_5207
F420-0-gamma-glutamyl ligase (454 aa)
 
        0.756
Psed_4096
F420-dependent oxidoreductase (312 aa)
   
          0.720
Psed_1379
F420-dependent oxidoreductase (304 aa)
   
          0.711
Psed_3813
F420-dependent oxidoreductase (331 aa)
   
          0.684
Psed_6332
F420-dependent oxidoreductase (289 aa)
   
          0.674
Psed_5307
FO synthase subunit 2 (866 aa)
 
        0.666
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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