STRINGSTRING
Psed_6238 protein (Pseudonocardia dioxanivorans) - STRING interaction network
"Psed_6238" - HAD-superfamily hydrolase in Pseudonocardia dioxanivorans
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6238HAD-superfamily hydrolase (260 aa)    
Predicted Functional Partners:
Psed_6236
Phosphoglycerate kinase (392 aa)
   
      0.833
Psed_3325
HAD-superfamily hydrolase (233 aa)
   
          0.767
Psed_6249
Ribulose bisphosphate carboxylase large chain (476 aa)
 
          0.762
Psed_6250
Ribulose-bisphosphate carboxylase (141 aa)
 
        0.754
Psed_1417
Phosphoribulokinase (292 aa)
 
          0.705
Psed_2940
HAD-superfamily hydrolase (216 aa)
   
          0.702
Psed_6237
Glyceraldehyde-3-phosphate dehydrogenase (339 aa)
   
 
  0.700
Psed_1539
Hypothetical protein (291 aa)
   
          0.643
Psed_3418
Phosphoglycerate kinase (392 aa)
   
      0.588
Psed_6239
Fructose-bisphosphate aldolase class-I (337 aa)
 
 
    0.586
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: Actinobispora, Amycolata, P. dioxanivorans, P. dioxanivorans CB1190, Pseudamycolata, Pseudoamycolata, Pseudonocardia, Pseudonocardia dioxanivorans, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans Mahendra and Alvarez-Cohen 2005, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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