STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Psed_6250PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: tcu:Tcur_1656 ribulose-bisphosphate carboxylase; SMART: Ribulose bisphosphate carboxylase, small chain. (141 aa)    
Predicted Functional Partners:
Psed_6249
HAMAP: Ribulose bisphosphate carboxylase, large subunit; KEGG: tcu:Tcur_1655 ribulose-bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; Belongs to the RuBisCO large chain family.
 
 0.999
Psed_1417
Phosphoribulokinase; KEGG: lch:Lcho_3754 phosphoribulokinase; PFAM: Phosphoribulokinase/uridine kinase.
 
 
 0.982
Psed_6251
CbbX protein; TIGRFAM: CbxX/CfqX, monofunctional; PFAM: ATPase, AAA-type, core; KEGG: tcu:Tcur_1657 CbbX protein; SMART: ATPase, AAA+ type, core.
 
  
 0.966
Psed_6243
PFAM: Phosphoribulokinase/uridine kinase; KEGG: tcu:Tcur_1650 phosphoribulokinase/uridine kinase.
 
  
 0.958
pgk
HAMAP: Phosphoglycerate kinase; KEGG: svi:Svir_15880 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.915
pgk-2
HAMAP: Phosphoglycerate kinase; KEGG: sen:SACE_2144 phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.915
Psed_2092
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nml:Namu_2348 haloacid dehalogenase domain-containing protein hydrolase.
    
 0.913
Psed_2743
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: cmi:CMM_2866 putative hydrolase.
    
 0.913
Psed_2947
PFAM: Haloacid dehalogenase-like hydrolase; KEGG: nfa:nfa35310 hypothetical protein.
    
 0.913
Psed_6252
PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: tcu:Tcur_1654 LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
   
 0.887
Your Current Organism:
Pseudonocardia dioxanivorans
NCBI taxonomy Id: 675635
Other names: P. dioxanivorans CB1190, Pseudonocardia dioxanivorans CB1190, Pseudonocardia dioxanivorans DSM 44775, Pseudonocardia dioxanivorans str. CB1190, Pseudonocardia dioxanivorans strain CB1190
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